Item List

3D PCA

PCA analysis result or UniFrac PCoA

Alpha diversity

Calculate Simpson Index and Shannon Index

Analysis setting

Setting for Quality Control of Read data, mapping and identify a subtype

Bar chart

Sample Comparison between samples in each Class

Export GISAID

An identification result will be exported as a public database  GISAID excel file format

Export result

Hierarchical clustering

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OTU

Bacterial species not found in Blast Database are also used for analysis

PCoA

Explore and to visualize similarities or dissimilarities of data

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Pie chart

Pie chart or spread sheet for each class from species to Super kingdom

Result

Assembling whole segments of influenza virus and mapping for identification of a subtype

SOM

Self-Organizing Map