コンピュータ科学者

Virus and microbial informatics

Japanese face skin microbiome database

MoA based Target and Drug discovery system

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COVID-19 Genome analysis on your Windows PC
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CovGAS: Automatic Corona virus Genome Assembly Software
OMICRON TESTED

CoVGAS (COVID-19) genome sequence analysis software is easy to use for an analysis of “COVID-19” sequence data, exported from a next generation sequencer to evaluate genome sequence analysis on a GUI. 

Through a workflow designed for COVID-19, data from a sequencer will be automatically processed, including the following steps.

  • Identification of a genome sequence

  • Extraction of amino acid variations against a reference sequence

  • Identification of a Nextclade type or Pangolin type

Specification

CPU:Core i5/ i7 or higher(8th generation or higher is recommended)

Memory:8Gb(16Gb or higher is recommended)

Storage: 1Tb or higher is recommended(Install storage 500Gb)

O  S   : Windows 10 64bit (version 1709 or later)

Influenza Genome analysis on your Windows PC
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FluGAS: Automatic Influenza virus Genome Assembly and subtyping System

Automatic distinction of subtypes of influenza viruses

FluGAS is user-friendly windows software to identify subtypes and distinct a base sequence, as an automatically assembled sequence, for each segment from influenza genome sequence data via a high performance sequencer.

Without a primer sequence selection as a problem of Real Time PCR method, an analysis of either influenza Type A or B is available now. 

Sequencer setting
Sequencer setting

Drag and drop Fastq files from Illumina MiSeq, or Fast5 files from Oxford Nanopore DNA Sequencer

press to zoom
Analysis setting
Analysis setting

Setting for Quality Control of Read data, mapping and identify a subtype

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Export result
Export result

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Sequencer setting
Sequencer setting

Drag and drop Fastq files from Illumina MiSeq, or Fast5 files from Oxford Nanopore DNA Sequencer

press to zoom
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Specification

CPU:Core i5/ i7 or higher(8th generation or higher is recommended)

Memory:8Gb(16Gb or higher is recommended)

Storage: 1Tb or higher is recommended(Install storage 500Gb)

O  S   : Windows 10 64bit (version 1709 or later)

 
16s Metagenome Sequence analysis on your Windows PC

High Throughput Sequencing Data Analysis Tool for the 16S rRNA Gene

Automatic Metagenome Analysis Software

It measures the composition and diversity of microbial species in natural environments such as water and soil, and useful across multiple fields, including the food and medical industries. Simply drag-and-drop the NGS data in the window, and it is filtered, sorted, and organized by taxonomy ID, reading counts, and grouped by taxonomic rank. Several statistical analyses will also be performed automatically.

 

Pie chart
Pie chart

Pie chart or spread sheet for each class from species to Super kingdom

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Sun burst graph
Sun burst graph

Display all class at once

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SOM
SOM

Self-Organizing Map

press to zoom
Pie chart
Pie chart

Pie chart or spread sheet for each class from species to Super kingdom

press to zoom
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Specification

CPU:Core i5/ i7 or higher(8th generation or higher is recommended)

Memory:8Gb(16Gb or higher is recommended)

Storage: 1Tb or higher is recommended(Install storage 500Gb)

O  S   : Windows 10 64bit (version 1709 or later)

 
Japanese Skin Microbial Database
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JSMD(Japanese Skin Microbial Database)is the database, analyzes skin microbiomes, collected from Japanese cheeks.

 

It analyzes skin microbiomes, collected from healthy people, and skin conditions, and creates a mutual relationship between skin conditions and significant bacteria.

 

It also weekly updates literature of cosmetic ingredients, related to skin microbiomes. You can promptly obtain important information for your research or product development.

 
Drug DISCOVERY 
LSKB is the drug discovery support system based on various secondary data set and discover the targets and drugs by AI based Mechanism of Action data and mining algorithms.
Also flexible automated analysis workflow and decision support tool will available on this Version 7.0.
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