Metagenome@Kin measures the composition and diversity of microbial species in many environments including water, soil, microbiota, yogurt & probiotics, and beer. The wide range of its applications makes it a useful resource to countless fields including the food and medical industries. Reads taken from the next generation sequencer will be automatically annotated with taxon ID by BLAST or RDP Classifier, and grouped by taxonomic rank. Automatic clustering tools for metagenome research (PCA, HCL, SOM) are also included with the software.
Main Functions and Features
Metagenomic analysis of bacteria to classify taxonomic ranks
Fungal Metagenomic analysis from RDP Classifier results with ITS 1/2 sequence data
Automatically create taxonomy tables from BLAST or RDP Classifier results
User defined BLAST filter settings
Confidence value filtering ability for the RDP Classifier results
Taxonomic classification of bacteria follows the NCBI taxonomy rule
All analyses can be performed through the user friendly GUI interfac
16S/18S rRNA databases provided
Exporting an HTML report is available to share result data
Metagenonimc 16S/28S/ITS Data Analysis Software
Measures the Composition and Diversity of Microbial & Fungal Species from RNA-Seq Data
EASY TO USE • FAST • NO MANUAL COMMANDS!
Example of Metagenome@Kin Result
MULTIPLE SAMPLE ANALYSIS
STATISTICAL ANALYSIS TOOLS
Unzip the file & open the "index.html" file in FireFox
Windows 7/8/10 64bit, 16G RAM
Input data format:
Tab delimited BLAST result / RDP Classifier result
(QC/BLAST/RDP Classifier tools available upon request or Homology Analysis Tool)
R 3.1 or later and Java 8 or later
* Metagenome@KIN trial version is a free tool and available. It provides taxonomic names and counts, pie graphs, sunburst graphs, and bar graphs up to the Genus rank. In order to download the trial version, click the button above.
Please note that your computer has at least Java 8 version.